Working for yourself in Japan, and filing in two countries.
Freelancers, consultants and small business owners have the most moving parts of any client this office sees: two tax systems, two sets of deadlines, and one social security question that decides a large part of the bill.
The 15.3% question
The foreign earned income exclusion and the foreign tax credit address U.S. income tax. Neither of them touches self-employment tax, which is charged at 15.3%. A profitable first year in Japan is often where people discover this.
The U.S.–Japan totalization agreement decides which country’s social security system you belong to. If you are covered by the Japanese system, a Certificate of Coverage from the Japan Pension Service is the document that supports the position on your U.S. return. Getting that certificate is part of the engagement, not an afterthought.
What gets handled on each side
United States
Schedule C, self-employment tax and the totalization position, the qualified business income deduction, and the foreign tax credit against Japanese tax already paid.
Japan
The blue return and its ¥650,000 electronic-filing deduction, the 10.21% withholding applied to certain payments to individuals, and whether invoice registration is in your interest.
Fee
¥275,000 + ¥55,000 = ¥330,000 per year, typical.
That is the combined U.S. and Japan annual plan plus the self-employment addition. First-year setup: +¥55,000, one time.
Every engagement begins with a fixed written quote.
Questions
I already pay into the Japanese pension system. Do I still owe U.S. self-employment tax?
If you are covered by the Japanese system and hold a Certificate of Coverage, the totalization agreement is intended to prevent the same earnings being charged twice. The certificate is the evidence for the position, so it is obtained before the return is filed rather than after.
Is the blue return worth filing?
For most self-employed people with proper books it is, because of the deduction and the treatment of losses. It has to be elected in advance, which is why the first year is the one that matters.
Do I need invoice registration?
It depends entirely on who your customers are. Registration is not automatically in your interest, and we would rather look at your actual invoices than give a general answer here.
Should I incorporate in Japan?
Sometimes, and rarely for the reason people expect. A Japanese company owned by a U.S. person brings its own U.S. reporting, which has to be weighed against the Japanese saving before anything is decided.
Start with the numbers you already have
Send last year’s figures and we will come back with a fixed quote and the two or three decisions that matter most in your case.
This site provides general information, not tax advice. Fees include Japanese consumption tax. Results depend on individual facts.
Aube — Japanese tax accountant (税理士) and U.S. Certified Public Accountant, Washington State (active). Kurashiki, Okayama, Japan. Opening November 2026 — consultations available now.